PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0309s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 290aa    MW: 32476 Da    PI: 4.7007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0309s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1686134254
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           ykGVr++k +g+++AeIrd +     r +r++lg+f+taeeAa+a+ +   +++
  Kalax.0309s0010.1.p  86 IYKGVRRRK-WGKFAAEIRDpF-----RkTRVWLGTFDTAEEAAAAYARKEAEYK 134
                          69****998.**********77.....45******************88777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-1685118No hitNo description
SMARTSM003802.7E-1586135IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-1786135IPR016177DNA-binding domain
PROSITE profilePS5103218.71686144IPR001471AP2/ERF domain
PfamPF008472.4E-1086128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2186129IPR001471AP2/ERF domain
PRINTSPR003672.4E-108798IPR001471AP2/ERF domain
PRINTSPR003672.4E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRPPRGKHVP ETIKKLRVIC SDPYATESDS SSGEEDEFTG GRRRPCKRHV QEILIRDDTN  60
KDEPGKPDDQ KPPGEKFQPK GKSSTIYKGV RRRKWGKFAA EIRDPFRKTR VWLGTFDTAE  120
EAAAAYARKE AEYKKLLAEK RSFSVTTCSP FLTPPRPSSS DDTADFCSLA SPSSVLDVTR  180
PAPPRPDHCR KTWDPCKEDN SFMMEEEELI SAFLKEPVLS PELSSVFDDS KLFESNQYLS  240
GSTPDLLASD GSTDLGQDAD FDGLMDSEFG WGNDDFTWID ETLNVEPST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1387128648ATERF1
3gcc_A5e-1387128648ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.16e-15cytokinin response factor 6